Some tools don’t require root privileges, and will let you customize your Python packages to your needs, without conflicting with any system-level Python installations, or Python installations other users have performed.

A Miniconda Python installation is a common prerequisite for Python-based applications in machine learning and other fields.

Minicondais a free software package that includes the condapackage and environment manager. https://docs.conda.io/en/latest/miniconda.html

1. Download the Miniconda installer

wget  https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

2. Run the installer

$chmod 755 Miniconda3-latest-Linux-x86_64.sh 

$./Miniconda3-latest-Linux-x86_64.sh 

3. Configuring Conda

$./conda update conda

 $./condaconfig --add channels bioconda

Minicondainstallers contain the condapackage manager and Python

   $ condainstall numpy

Creating environments with Conda
  $ condainstall bwa 

Or a new environment can be created:

  $ condacreate -n aligners bwa bowtie hisatstar

Some tools came with singularity image. Please read more about how to use singularity container. You can use module to load singularity as:
Module avail

module load singularity/2.5.1

https://singularity.lbl.gov/quickstart
http://mskcchpc.org/display/CLUS/Singularity+Usage

If you would like to request help installing the software, please use this form here: http://hpc.mskcc.org/software-installation-request/